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- AAAS – American Association for the Advancement of Science
- AEC – Atomic Energy Commission (forerunner of DOE)
- AFCS – Alliance for Cellular Signaling
- AIP – American Institute of Physics
- AUTM – Association of University Technology Managers
- BAA – Broad Agency Announcement
- CDC – Centers for Disease Control and Prevention
- CEPH – Centre d’Etude du Polymorphisme Humaine
- CERN – Conseil European Pour La Rechierche Nucleaire
- CES – Cooperative Extension Services
- CGAP – Cancer Genome Anatomy Project
- COSEPUP – Committee on Science, Engineering, and Public Policy
- CRADA – Cooperative Research and Development Agreement
- CSR – Center for Scientific Review
- DARPA – The Defense Advanced Research Projects Agency
- DHHS – Department of Health and Human Services
- DOD – Department of Defense
- DOE – Department of Energy
- DTP – Developmental Therapeutics Program
- EDRN – The Early Detection Research Network
- EPA – Environmental Protection Agency
- EST – Expressed Sequence Tag
- FDA – Food and Drug Administration
- GPRA – Government Performance and Results Act
- HGP – Human Genome Project
- HHMI – Howard Hughes Medical Institute
- HRT – Hormone Replacement Therapy
- HUGO - Human Genome Organization
- HUPO – Human Proteome Organization
- INS – Immigration and Naturalization Service
- IRG – Integrated Review Groups
- IUPAP – International Union of Pure and Applied Physics
- JCSG – Joint Center for Structure Genomics
- MBL – Marine Biology Laboratory
- MMHCC – Mouse Models of Human Cancers Consortium
- MOU – Memoranda of Understanding
- NACA – National Advisory Committee for Aeronautics
- NAS – National Academy of Sciences
- NASA – National Aeronautics and Space Administration
- NCAB – National Cancer Advisory Board
- NCI – National Cancer Institute
- NDRC – National Defense Research Committee
- NHGRI – National Human Genome Research Institute
- NHLBI – National Heart Lung and Blood Institute
- NIAID – National Institute of Allergy and Infectious Diseases
- NIEHS – National Institute of Environmental Health Science
- NIGMS – National Institute of General Medical Sciences
- NIH – National Institutes of Health
- NOAA – National Oceanic and Atmospheric Administration
- NOARL – Naval Oceanographic and Atmospheric Research Laboratory
- NRAC – Naval Research Advisory Committee
- NRC – National Research Council
- NRSA – National Research Service Awards
- NSF – National Science Foundation
- NTP – National Toxicology Program
- OES – Office of Experiment Stations
- OMB – Office of Management and Budget
- ONR – Office of Naval Research
- OSHA – Occupational Safety and Health Administration
- OSTP – Office of Science and Technology Policy
- OTA – Office of Technology Assessment
- OTIR – Office of Technology and Industrial Relations
- PA – Program Announcement
- PDB – Protein Data Bank
- PFGRC – Pathogen Functional Genomics Resource Center
- PSAC – Presidents Science Advisory Committee
- PSI – Protein Structure Initiative
- RAID – Rapid Access to Intervention Development
- RFA – Request for Applications
- RTLA – Reach Through License Agreements
- SBIR – Small Business Innovation Research
- SDI – Strategic Defense Initiative
- SEP – Special Emphasis Panels
- SNP – Single Nucleotide Polymorphisms
- SPORE – Specialized Programs of Research Excellence
- SSC – Superconducting Super Collider
- STC – Science and Technology Centers
- STTR – Small Business Technology Transfer
- TIGR – The Institute for Genomic Research
- UIP – Unconventional Innovations Program
- URA – Universities Research Association
- USDA – United States Department of Agriculture
- VA – Department of Veterans Affairs
- VRC – Vaccine Research Center
- WHI – Women’s Health Initiative